Organic Chemistry Practice Problems and Problem Sets
mass spec
The 1H and 13C NMR spectra of an unknown compound are shown below. The compound's mass spectrum shows a molecular ion with m/z ratio of 86. Determine the structure of this compound.
This is a difficult problem because we are never given the compound's molecular formula, only its mass (the molecular ion is the mass of the compound).
So first, let's make a guess of this compound's molecular formula.
Do we have any clues about what atoms are present in this molecule? Yes. The 13C NMR peak at ~210 ppm indicates a carbonyl (specifically an aldehyde or ketone). So there must be at least one oxygen (and 1 IHD.)
So let's do some math:
1O is 16. Mass is 86. 86-16 - 70. That's the total mass of C's and H's we have to work with.
How many C's can we "fit" in 70? 6 C's would be 72, so let's try 5 C's.
5 C's is 60, so we need 10 H's to make 70.
So a formula of C5H10O has the correct mass. It also has the correct number of IHD (1). So let's go with it.
Now we follow the series of steps laid out in problem 662:
1.Are there any hints?
We sort of did this step already, but yes- this molecule contains an aldehyde or ketone. Since we don't see a singlet at ~10 ppm on the 1H NMR, it can't be an aldehyde. So it must be a ketone.
2.How many IHD are there? (also known as DBE or degrees of unsaturation).
C5H10O is the same as C5H10 (ignore oxygen). C5 would be C5H12 if fully saturated (because of CnH2n+2), so this molecule is missing 2 hydrogens, which corresponds to 1 IHD.
3.Draw some C5H10O structures with 1 IHD and eliminate, learn, repeat.
Some things we know from the NMR spectra:
There's a doublet with an integration of 6, and a multiplet with an integration of 1. This screams isopropyl group.
That singlet with an integration of 3 is probably a methyl group.
As mentioned above, since we don't see the aldehyde proton anywhere, the carbonyl must be a ketone.
Now draw a few candidate structures based on these clues and eliminate those structures that don't fit the data. If anything doesn't fit, you must elminate the entire structure.
These (no molecular formula, only MS data) are the hardest kinds of NMR problems you'll get in sophomore organic chemistry, so don't worry if you find it challenging- you're supposed to.
MendelSet practice problem # 665 submitted by Matt on July 18, 2011.
The mass spec of 4-nonanone shows peaks at m/z = 58, 71, 86, 99.
Using curved arrows or hooks, show how each of these fragments can form via alpha cleavage or the McLafferty rearrangement. (and draw the structure of the indicated species in the appropriate box).
Note that I drew the McLafferty rearrangements using arrows (2 electrons moving at once). Some textbooks use hooks instead, but the results are the same.
In most ungraduate organic chemistry courses, being able to draw an alpha cleavage is much more important than a being able to draw a McLafferty rearrangement (which tends to only show up on bonus problems).
MendelSet practice problem # 659 submitted by Matt on July 17, 2011.
The mass spec of methyl ethyl ether shows peaks at m/z = 45 and 59.
Use hooks to show the alpha cleavages that result in these two fragments.
MS ionization will knock off an electron from the heteroatom (atom that's not C or H), in this case, the oxygen, leaving behind a positively charge compound. This is the molecular ion (M+).
Oxygen usually undergoes homolytic cleavage- the bond splits and each atom gets one electron. Since only one electorn is involed, we use hooks instead of the usual curved arrows.
If your professor is into mass spec cleavage mechanisms, I suggest you practice this mechanism, called an alpha cleavage (see image below).
MendelSet practice problem # 658 submitted by Matt on July 17, 2011.
The mass spec of chlorocyclohexane shows a peak at m/z = 83.
Use curved arrows to show the heterolytic cleavage that accounts for this fragment.
Heteroatoms (atoms that are not C or H) are always the most likely atoms to lose an electron during mass spec, and this will be no exception. Mass spec will blow off an electron from the chlorine, leaving behind the molecular ion (M+). But the molecular ion will then fragment.
The problem told us it was a heterolytic cleavage, in which both electrons form the bond go towards the positive charge. Because two electrons are involved, we use curved arrows as usual.
This results in a neutral chlorine radical and a carbocation with formula C6H11, for a total mass of 83 (6 x 12 + 11 x 1). Note that the chlorine radical doesn't give an MS peak because it is neutral.
MendelSet practice problem # 657 submitted by Matt on July 17, 2011.