Use curved arrows to show the formation of the tetrahedral intermediate of a Fischer esterification reaction (shown below). There are three steps in total.
This is a good mechanism to know (nucleophilic acyl substitution). If you don't understand it, see problems 706 and 708.
MendelSet practice problem # 724 submitted by Matt on July 24, 2011.
Draw out the mechanism for the addition of excess phenyl Grignard to the carbonyl compound below.
This carbonyl has two leaving groups attached to it- each of those oxygens can take part in a nucleophilic acyl substitution reaction and form a new carbonyl product.
First the Grignard attacks the oxidation state IV carbonyl carbon (4 oxygen bonds, so oxidation state 4). The carbonyl itself will act as a leaving group and form a tetrahedral intermediate. But tetrahedral intermediates don't last if there are any leaving groups attached to the carbon, so the -O will "come back down again", kick off an oxygen leaving group, and reform the carbonyl.
Then a second equivalent of Grignard will attack that carbonyl (an ester), and we will do another nucleophilic acyl substitution reaction to form yet another carbonyl.
Finally, the third carbonyl doesn't have any leaving groups built in (it's a ketone), so when the third equivalent of Grignard attacks it, it will do a nucleophilic acyl addition reaction, and the product will be an alcohol.
Notice that as the reaction progresses the oxidation state of the carbonyl carbon (number of oxygen bonds attached to it) goes down form 4 to 3 to 2 and then to 1.
MendelSet practice problem # 670 submitted by Matt on July 18, 2011.
The overall mechanism for Fischer esterification is shown below. This isn't a real mechanism, just an outline.
Methanol (the nucleophile) attacks the carbonyl carbon, forming a tetrahedral intermediate, which then loses a water to reform the carbonyl. This mechanism is called nucleophilic acyl substitution.
Use curved arrows to draw a full mechanism for this reaction. I've included structures for you to use as a guide.
This reaction takes place under acidic conditions, so the mechanism you draw will be similar to those in problem 706.
Acidic mechanisms only appear complicated because they contain several proton transfer steps.
Nucleophilic acyl substitution mechanisms have only three real steps- the "up, down, and kick."
First, the nucleophile attacks the carbonyl carbon, forming a tetrahedral intermediate (the "up").
Then the carbonyl reforms (the "down") and a leaving group leaves (the "kick").
MendelSet practice problem # 708 submitted by Matt on July 22, 2011.
A chemist carried out a Fischer esterification using methanol that was isotopically labeled with 18O (indicated with an asterisk).
Which one of the esters below (A-D) was formed?
To answer this problem, you must be familiar with the nucleophilic acyl substitution mechanism.
In this mechanism, the nucleophile (methanol) becomes the -OCH3 group in the ester.
At least 80% of second semester organic chemistry is two mechnanisms: nucleophilic acyl addition and nucleophilic acyl substitution. It's worth your time to become familiar with these mechanisms. See problems 705 (basic conditions), 706 (acidic conditions), 707, and 708.
MendelSet practice problem # 725 submitted by Matt on July 24, 2011.
The ester below was dissolved in a solution of water, a small amount of which was isotopically labeled with O-18, denoted with an asterisk.
After a few hours, some isotopically labeled oxygen was found in the ester. Where was it found in the ester? Can you explain why?
To answer this problem, you must be familiar with the nucleophilic acyl substitution mechanism. (see problem 725)
Water reacts with an ester to form a carboxylic acid. This is what happens here.
If there is only trace amounts of water, it's possible that the water reacts with the ester to form a carboxylic acid, and then goes back to reform the ester. But, in this process, leaves an isotopically labeled oxygen in the carbonyl position.
MendelSet practice problem # 729 submitted by Matt on July 24, 2011.
Rank the amines W through Z below in order of decreasing basicity (1 = most basic). Explain your reasoning.
Electron withdrawing groups (EWG) reduce electron density and reduce basicity. Resonance delocalizes electron density and so also decreases basicity (the electrons are less available to pick up a proton).
Electron donating groups (EDG) add electron density and increase basicity.
Alkyl groups are weakly EDG (induction), and hydrogen is neither EDG nor EWG. So cyclohexylamine (compound X) is a stronger base than ammonia (compound W).
Aniline (compound Y) has resonance, so it is less basic than compound X, which does not have resonance.
N-acyl aniline (compound Z) has more resonance forms than aniline, so it will be the least basic.
So the overall over is:
(most basic) X > W > Y > Z (least basic)
MendelSet practice problem # 753 submitted by Matt on July 27, 2011.
For each amine below, show all Hofmann elmination products.
If more than one product is formed, predict which one will be the major product.
The Hoffman elimination first turns an amine into a better leaving group by methylating it with excess methly iodide, and then eliminates the methylated amine using base (such as -OH fomed from Ag2O in H2O). The products are alkenes.
This reaction is similar to an E2 elimination in that a beta proton is ripped off, and the alkene forms between alpha and beta. One notable difference from the E2 is that the less substituted product is favored, so Hoffman products are usually anti-Zaitsev.
a) There are three different types of beta protons, so three possible products can form. Product A is the least substituted alkene, so it's the major product.
b) There is only one possible product. The Hoffman elimination can't be done on aryl hydrogens (benzene rings).
MendelSet practice problem # 756 submitted by Matt on July 27, 2011.
Show how each amine can be prepared from a carbonyl and an amine via reductive amination.
Reductive amination is a two step process. First, an imine or enamine is formed from a carbonyl and an imine.
Then, a the imine (or enamine) is reduced to an amine (using reducing agents such as H2, NaBH4, NaBH3(CN), NaBH(OAc)3, etc.). For practice on forming imine and enamines, see problem 712).
MendelSet practice problem # 754 submitted by Matt on July 27, 2011.
The nitrosyl cation is shown below. Also shown are several proposed resonance arrows, only one of which is correct.
Draw the resonance forms that would follow from each set of arrows, and include formal charges. Which one is the correct resonance form? Explain your reasoning.
When evaluating possible Lewis structures the most important rule to follow is the octet rule: every atom must be surrounded by 8 and only 8 electrons (atoms in period 3 or below on the periodic table have d orbitals and so can contain more than 8 electrons, but that exception does not apply here).
Do any of the resonance forms drawn have atoms that break the octet rule? Yes- they all do! Except for resonance arrows in D. So D is the correct resonance form.
MendelSet practice problem # 755 submitted by Matt on July 27, 2011.
Imidazole (shown below) has two nitrogen atoms, N-1 and N-3. Which nitrogen is more basic?
To answer this problem, draw the product after each nitrogen protonates, and compare their stabilities. Explain your reasoning.
Imidazole is aromatic. When N-3 protonates, the product is still aromatic.
But when N-1 protonates, the product is no longer aromatic (and therefore significantly less stable).
Because of this, N-3 is much more basic than N-1. Another way of thinking of this is that the lone pair on N-1 is involved in the aromatic circuit, and so is not available to pick up a proton.
MendelSet practice problem # 584 submitted by Matt on July 9, 2011.
Rank the amines A through D below in order of decreasing basicity (1 = most basic). Explain your reasoning.
sp2 carbons are more electronegative (electron withdrawing) than sp3 carbons due to increased s-character. Electron withdrawing groups (EWG) make acids more acidic and bases less basic.
For this reason, piperidine (compound A) is the more basic than pyridine (compound B):
(more basic) A > B (less basic)
Nitro (-NO2) is an EWG, so 4-nitropyridine (compound C) will be less basic than compound A.
Dimethylamine is an electron donating group (EDG), so it adds electron density to pyridine and increases basicity. So dimethylamino pyridine (DMAP, compound D) will be more basic than compound A:
(more basic) D > B > C (less basic)
So how does compound A compare with compound D? There is no way of predicting this based on EWG/EDG rules alone. After all, what should be more basic: piperidine, which has sp3 carbons (increases base strength), or DMAP, which has sp2 carbons (decreases base strength) but also an EDG (increases base strength) ?
There's no way to tell. But it turns out that Piperidine is a little more basic than DMAP. So the overal order is:
(more basic) A > D > B > C (least basic)
MendelSet practice problem # 752 submitted by Matt on July 27, 2011.
Propose a synthesis to accomplish each transformation. The only carbon sources allowed are alkenes and NaCN.
a) The starting alkene has 4 carbons, and the product has 5 carbons and a nitrogen. So you have to add 1C and 1N. This screams "add cyanide!"
Based on the location of the alcohol on the product, it looks like the way to go is to add NaCN to an epoxide. This puts the -CN and the -OH in the right positions.
b) The best way to prepare 2º and 3º amines is via reductive amination. Working backwards, the product can be prepared from a 4-carbon aldehyde (butyraldehyde) and a 3-carbon amine (propyl amine).
Performing hydroboration on the butene results in the anti-Markovnikov alcohol, which can be oxidized to the aldehyde using PCC.
To prepare propyl amine from an alkene, add HBr/peroxides to make the bromide (anti-Markovnikov), and then add NaN3 follow by H2/Pd.
MendelSet practice problem # 757 submitted by Matt on July 27, 2011.
a) Rationalize the relative stabilities of the cation species below.
b) Pyridine undergoes eletrophilic substitution at C-3. Let's compare the resonance forms of EAS carbocation intermediates to see why this is the case. Consider part a) in your explanation.
a) The species on the left are much more stable than the species on the right because they have complete octets.
Nitrogen is less electronegative than oxygen, so a positive nitrogen (with a full octect) is more stable than a positive oxygen; oxygen is electronegative and so doesn't "like" being positive (have low electron density).
The carbocation and the "nitrocation" are both very unstable because they only have 6 valence electrons. Because nitrogen is more electronegative than carbon, the nitrocation is even less stable than the carbocation, because its worse at handling a positive charge.
b) The cation intermediates that result from substitution at C-3 only contain carbocations, while the intermdiates from C-2 or C-4 substitution contain a "nitrocation," which is less stable than a regular carbocation, and so are not favored. So pyridine undergoes EAS reactions at C-3.
One more note: For substitution at C-2 and C-4, it's tempting to draw a resonance form where the positive charge is on the nitrogen, which is flanked by two double bonds. But this cyclic compound is too strained to exist, and so doesn't contribute to this analysis.
MendelSet practice problem # 593 submitted by Matt on July 9, 2011.
Pyrrole undergoes eletrophilic aromatic substitution at C-2. Let's compare the resonance forms of EAS carbocation intermediates to see why this is the case. What do you think? Why C-2 and not C-3?
Electrophilic substitution at C-2 leads to a carbocation intermediate with three resonance forms, while substitution at C-3 leads to a carbocation intermediate with only two resonance forms.
The C-2 intermediate has more resonance forms than the C-3 intermediate, and so is more stable. Therefore, EAS occurs at C-2.
MendelSet practice problem # 591 submitted by Matt on July 9, 2011.
Show how each alcohol can be prepared from a combination of a carbonyl and a Grignard reagent.
The trick to these retrosynthesis problems is to determine where the connections or "cuts" were made.
The carbonyl carbon becomes an alcohol after a Grignard reaction, so that's where the "cut" must be.
Note that there can often be more than one correct answer to these types of problems.
For a), adding propyl Grignard to acetone or methyl Grignard to 2-pentanone will result in the product.
We can also use two equivalents of methyl Grignard with 4-carbon ester, such as ethyl butanoate. Esters contains a build in leaving group (-OR) and so react twice with Grignards.
For b), adding phenyl Grignard to cyclopentanone will do the job.
MendelSet practice problem # 668 submitted by Matt on July 18, 2011.
Carbonyls are in equilibrium with their hydrate forms. This equilibrium happens in both acid and base.
Let's go through this equilibrium under basic conditions. Draw a mechanism using curved arrows for each reaction below.
Remember that under basic conditions, most species are either neutral or negatively charged, and rarely positively charged. So your structures will contain either ROH or RO-, but not ROH2+.
a) Carbonyl to Hydrate
Notice that no oxygen is ever positive during these basic mechanisms (always negative or neutral).
b) Hydrate to Carbonyl
The mechanisms in this problem and problem 706 are the most common mechanisms you will draw during second semester organic chemistry, and so it's a good idea to draw them out a few times.
In a), the nucleophile attacks the carbonyl carbon, and the double bond goes "up" to form a tetrahedral (sp3) carbon.
In b), one of the oxygen atoms acts as leaving group, and a lone pair on the other oxygen comes "down" to reform the double bond (and the sp2 carbon).
You will see this "up, down, kick" pattern in most mechanisms that involve attack at the carbonyl carbon, which is most of the reactions in second semester orgo!
a) Carbonyl to Hydrate (basic conditions) "UP"
b) Hydrate to Carbonyl (basic conditions) "DOWN"
MendelSet practice problem # 705 submitted by Matt on July 21, 2011.
Carbonyls are in equilibrium with their hydrate forms. This equilibrium happens in both acid and base.
Let's go through this equilibrium under acidic conditions. Draw a mechanism using curved arrows for each reaction below.
Remember that under acidic conditions, most species are either neutral or positively charged, and rarely negatively charged. So your structures will contain either ROH or ROH2+, but not RO-.
a) Carbonyl to Hydrate (acidic)
b) Hydrate to Carbonyl (acidic)
The interconversion between a carbonyl (sp2 carbon) and a tetrahedral intermediate (sp3 carbon) is the most common mechanism you will encounter in second semester organic chemistry.
You should be familiar drawing it under both acidic (this problem) and basic (problem 705) conditions.
In a), the carbonyl "goes up" to form a tetrahedral intermediate.
In b), an oxygen "comes back down" to reform the carbonyl and kick off a leaving group.
You will see this "up, down, kick" pattern in most mechanisms that involve attack at the carbonyl carbon, which is most of the reactions in second semester orgo!
a) Carbonyl to Hydrate (acidic) "UP"
Because this reaction takes place under acidic conditions, the carbonyl must protonate before the nucleophile attacks, to prevent oxygen from ever being negative (ROH instead of RO-).
b) Hydrate to Carbonyl (acidic) "DOWN"
The leaving group must protonate before it leaves, so it doesn't leave as a negative molecule (H2O instead of HO-).
MendelSet practice problem # 706 submitted by Matt on July 22, 2011.
Rank the carbonyls A-D below in order of decreasing electrophilicity (reactivity with nucleophiles).
(1 = Most reactive). Explain your reasoning.
The carbonyl carbon is electrophilic because it has a partial positive charge.
Are there any groups that make a carbon more positive? Yes, electron withdrawing groups (EWG). They pull away electron density, which increases electrophility. So C is the most reactive.
Conversely, electron donating groups (EDG) add electron density, and so make the carbonyl carbon less positive, and less electrophilic. Alkyl groups (carbon chains) are mildly EDG so ketone B will be less reactive than C.
Hydrogen is neither a EDG or EWG, so the aldehyde A will be in between the B and C. Also, the hydrogen is very small, so the carbonyl carbon is easily to get to (less steric bulk to block an attack).
Ester D is the least reactive because it has a resonance (the lone pair on the oxygen gets involved).
So overall, the order form most reactive to least reactive is C > A > B > D.
MendelSet practice problem # 710 submitted by Matt on July 22, 2011.
The overall mechanism for imine formation is shown below. (This isn't a real mechanism, just an outline)
Use curved arrows to draw the full mechanism for imine formation under acidic conditions. (I've added outlines of the intermediate structures for you to use as a guide). This mechanism is similar to that in problem 706 (carbonyl hydrate equilibria).
This reaction takes place under acidic conditions, so oxygen should never be negative (only neutral or positively charged).
Acidic mechanisms tend to be a bit of pain, because you have to include many proton transfer steps (protonation and deprotonation).
MendelSet practice problem # 707 submitted by Matt on July 22, 2011.
Show two ways of preparing the alkene below via the Wittig reaction starting from triphenyl phosphine (PPh3).
Is one route better than the other? Why?
Alkenes can be prepared from a combination of ylide and aldehyde or ketone. This is the Wittig reaction.
One carbon on the alkene comes from the carbon bonded to the PPh3 on the ylide, and the other carbon comes from the carbonyl.
There are usually two different ways to make an alkene via the Wittig reaction. So is one way better than the other?
Yes. Ylides come from the SN2 reaction of PPh3 with an alkyl halide. Because it's an SN2 reaction, you want to use the least substituted alkyl halide! (1º is better than 2º). So of the two reactions below that would result in the desired alkene, the top method is better because it involves the less bulky alkyl halide.
This principle also holds true for the Williamson ether synthesis (problem 703). Less substituted alkyl halides are better for SN2 reactions.
MendelSet practice problem # 711 submitted by Matt on July 22, 2011.
Complete each synthesis below. All carbon sources must come from alkenes.
Each synthesis will involve protecting groups.
The protecting group most commonly used for aldehydes and ketones (in undergraduate orgo) is ethylene glycol.
It is put on using HOCH2CH2OH/H+ and removed with H2O/H+.
For a), the reaction calls for the use of acetylide with an alkyl halide. But acetylides also react with carbonyls.
So before the alkyne is deprotonated using a strong base (such as NaNH2), the carbonyl must be protected with ethylene glycol.
For b), the reaction calls for the addition of two equivalents of phenyl Grignard to the ester. The problem is that esters aren't as reactive as ketones (or aldehydes), so the Grignard would react with the ketone before it ever touched the ester! To prevent this, the ketone must be protected before Grignard is added.
MendelSet practice problem # 714 submitted by Matt on July 22, 2011.
When a carbonyl is treated with semicarbazide under acidic conditions an "imine" is produced called a semicarbazone.
Which of the two products below is the correct structure for a semicarbazone? Explain.
What this problem is really asking is "Which nitrogen on semicarbazide is more nucleophilic?"
The nitrogens bonded to the carbonyl on semicarbazide all have resonance forms, so their lone pairs aren't as available for nucleophilic attack.
The other nitrogen (on the left) is the most nucleophilic because it isn't involved in any resonance forms, so its lone pair isn't shared with another atoms.
MendelSet practice problem # 713 submitted by Matt on July 22, 2011.